$ sudo apt-get update
$ sudo apt-get upgrade
 
$ sudo apt-get install software-properties-common
$ sudo add-apt-repository ppa:webupd8team/java
$ sudo apt-get update
 
$ sudo apt-get install oracle-java7-installer

$ wget -O - http://packages.elasticsearch.org/GPG-KEY-elasticsearch | apt-key add -
$ sudo echo "deb http://packages.elasticsearch.org/elasticsearch/1.1/debian stable main" >> /etc/apt/sources.list
 
$ sudo apt-get update
$ sudo apt-get install elasticsearch

$ sudo update-rc.d elasticsearch defaults 95 1
 
$ sudo /etc/init.d/elasticsearch start
 
$ curl -X GET 'http://localhost:9200'
{
 "status" : 200,
 "name" : "Fer-de-Lance",
 "version" : {
  "number" : "1.1.1",
  "build_hash" : "f1585f096d3f3985e73456debdc1a0745f512bbc",
  "build_timestamp" : "2014-04-16T14:27:12Z",
  "build_snapshot" : false,
  "lucene_version" : "4.7"
 },
 "tagline" : "You Know, for Search"
}

$ sudo /usr/share/elasticsearch/bin/plugin -i elasticsearch/marvel/latest
 
$ sudo /etc/init.d/elasticsearch restart
 * Stopping Elasticsearch Server                      [ OK ]
 * Starting Elasticsearch Server                      [ OK ]

$ sudo apt-get install python-pip
$ sudo pip install elasticsearch

#!/usr/bin/python
# -*- coding: UTF-8 -*-
 
import os, os.path, sys, re
import csv, time, string
from datetime import datetime
from elasticsearch import Elasticsearch
 
def import_to_db():
  data = csv.reader(open('gene_info.txt', 'rb'), delimiter='\t')
  data.next()
 
  es = Elasticsearch()
  for row in data:
    doc = {
      'tax_id': row[0],
      'GeneID': row[1],
      'Symbol': row[2],
      'LocusTag': row[3],
      'Synonyms': row[4],
      'dbXrefs': row[5],
      'chromosome': row[6],
      'map_location': row[7],
      'description': row[8],
      'type_of_gene': row[9],
      'Symbol_from_nomenclature_authority': row[10],
      'Full_name_from_nomenclature_authority': row[11],
      'Nomenclature_status': row[12],
      'Other_designations': row[13],
      'Modification_date': row[14]
    }
    res = es.index(index="gene", doc_type='gene_info', body=doc)
 
def main():
  import_to_db()
 
if __name__ == "__main__":
  main()

$ wget https://download.elasticsearch.org/kibana/kibana/kibana-3.0.1.tar.gz
$ tar zxvf kibana-3.0.1.tar.gz
$ sudo mv kibana-3.0.1 /usr/share/elasticsearch/plugins/_site
$ sudo /etc/init.d/elasticsearch restart